Latest posts tagged with #SWAT4HCLS on Bluesky
STRONG-AYA members Joshi Hogenboom and Varsha Gouthamchand, @maastrichtu.bsky.social, demonstrated the Flyover #data FAIR-ification tool at the #SWAT4HCLS Conference in Amsterdam. Watch Flyover in action here: strongaya.eu/news/maastri...
#FAIRdata #interoperability #healthdata #HorizonEU
short write up of #swat4hcls: https://doi.org/10.59350/bmxve-vry14 chem-bla-ics.linkedchemistry.info/2026/04/04/swat4hcls-202...
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#SWAT4HCLS is over.
Today, I am at the #KNCV CTC meeting, where we are launching the #Cheminformatics and #DrugDiscovery working group, as part of the CTC Section
LS concluded her talk and mentioned their semantic mapping data is available from Zenodo: https://doi.org/10.5281/zenodo.18350592
#swat4hcls
The Helmholtz KG team from HMC Hub Information & HMC Hub Health is here in full force 🚀
After two fantastic days with highlights like: - Tutorials on #GraphRAG, advanced SPARQL & provenance harmonization - An inspiring keynote by Hannah Bast on “What’s new in QLever”
Curious about how we unify distributed data into a queriable knowledge graph? Come by and chat with us 🙌
Final day at #SWAT4HCLS at Amsterdam UMC. The Helmholtz KG team (HMC Hub Information & Health) is here in full force! 🚀
Highlights so far:
• GraphRAG, SPARQL & provenance tutorials
• Keynote by Hannah Bast on QLever
• Great poster session
@swat4hcls.bsky.social
last speaker before lunch is Lilly Schuckert about data for neuromuscular diseases
#swat4hcls
third speaker is Sergi Aguiló-Castillo (@Radboud_uni) who will talk about Automated Quality Metrics Assessment in Real World Data for Rare Diseases Registries.
AutoQ-RWD: https://github.com/cmbi/AutoQ-RWD
#swat4hcls
the next speaker is Olga Endrich, taking about "Rx Norm for Europe - Toward the representation of medicinal products in the OMOP CDM"
#swat4hcls
the first talk after the coffee break is about STELA and "Unifying SNOMED CT Logical Expressions and Textual Descriptions"
#swat4hcls
the third talk is introduced by @Andrawaag and remotely given by Robert Hoehndorf, about ontological modelling of dynamic biodiversity consensus
Of course, this is also what the #Wikiblitz ongoing here is about
#swat4hcls
the 2nd talk is by a team of two speakers from the IDS team at Maastricht University (Dumontier's group) about Embedding-based Deduplication of Knowledge Graphs using Graph Neural Networks
I think this would be a very interesting alternative to find WikiPathways/Rhea matches we previous did […]
Screenshot of the Chebifier website in action in the SMILES CCCCCCO, recognizing it as a primary alcohol (and organooxygen compound).
JH shows recent work where they use LLMs together with chemical similarity knowledge to do ChEBI ontology classification, the chebifier: https://chebifier.hastingslab.org/ and https://doi.org/10.1039/D3DD00238A
#swat4hcls #cheminformatics
after covering some of her past ontology work, JH is introducing us to the Behaviour Change Intervention Ontology (BCIO): https://www.bciontology.org/
"here the key thing is a research report"
#swat4hcls
welcome to the live coverage of #SWAT4hcls !
We're kicking off day 2 of the symposium with a keynote by Janna Hastings!
@jerven maybe an @OpenAlex SPARQL end point is next?
#SWAT4HCLS
the last speaker today is Hannah Bast talking about QLever, now showing how it compares to alternatives
#SWAT4HCLS
#SWAT4HCLS nice to see #qlever with a 1 trillion triple dataset. Or four UniProts ;)
@wikipathways more on Vodorezova's FDPcrawleR can be found here: https://github.com/vodor001/FDPcrawleR
#SWAT4hcls
second speaker is Kristina Vodorezova about FDPcrawleR, working in the ERDERA project on rare diseases
I wonder what the results are for the @wikipathways FDP
#SWAT4hcls
after my Scholia demo (during the poster session), now listening to two talks before the final keynote of today.
First, Yael Tirlet is speaking about SPARQL modules, so that people can focus on what they want to query, rather than how.
Thinking about my talk and that of others, we need a […]
I stepped out from the session bc of a cough from last week that doesn't want to go away, and because my batteries were running out and I have a demo to give later this afternoon
I am sitting in the biohackathon area, with a RDF4RiskAssessment poster from four people from the German BfR
@bfr […]
It actually turns out that many speakers do not have Wikidata pages #SWAT4HCLS
we're back from lunch (no signs, so not clear what I had), and now started the first session after lunch by Samaneh Jozashoori and Nirmal Raman Kannaiyan using KGs and LLMs on literature for the purpose of drug repurposing
#swat4hcls
the second talk in the session also shows that RDF in hospitals is there. Enough that people are now focusing on querying across databases, and no longer just aligning ontologies.
Also, it shows that writing efficient SPARQL queries is something that requires tweaking SPARQL queries. The order […]
second session just started with the first talk by Sabine Österle and Jan Armida about sharing health/patient data in Switzerland, across 26 kantons and legislations and 4 national languages
#swat4hcls
third speaker is Pedro Paulo Favato Barcelos, of Health-RI about ontologies in patient history provenance
he quotes: "the opposite of an ontology is not a non-ontology, but a bad ontology" -- someone
#swat4hcls
second speaker is Ömer Durukan Kılıç from Maastricht University. He is talking about MIMIC-III, which I think is described here: https://doi.org/10.1016/j.ijmedinf.2026.106297
#swat4hcls
Photo of Cornet talking about the growth of ontologies reigstered in BioPortal (visibile on the slide in the background), in a Amsterdam UMC lecture hall, with a replica of Rembrand's "The Anatomy Lesson of Dr. Nicolaes Tulp" on the wall on the left side.
first speaker is Ronald Cornet (https://qlever.scholia.wiki/orcid/0000-0002-1704-5980 talking about the history of ontologies, reasoning, and more
"we have been talking about reasoning over patient data for more than 20 years, but we still have not solve it"
#swat4hcls
