Latest posts tagged with #genomeAnnotation on Bluesky
Join our Virtual Genome Annotation Workshop on May 19-21! 🧬 Learn Linux, genome assembly, evidence-based annotation, + evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $600 ($500 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
Tiberius makes it a bit "prematurely dead" - but it's coming. It won't be more accurate than BRAKER3. But it will be shiny. Scalable. Maintainable. Bring the UTRs and downstream statistics, and the full isoseq integration. Happy Easter! BRAKER4 coming soon. #genomeannotation #BRAKER
#ERGAReads | Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model 🧬
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
The new diatom Tiberius parameters for unmasked genomes illustrate the gain in accuracy that we often observe compared to parameters for unmasked genomes. #geneprediction #genomeannotation #diatoms #bacillariophyta github.com/Gaius-August...
We have a new insect parameter set for unmasked genomes and a new fungal parameter set for unmasked genomes. Both deliver accuracy superior to previous models for insects and fungi. #genomeannotation #geneprediction github.com/Gaius-August...
What we more recently learnt about Tiberius: the models trained on softmasked genomes are very sensitive to how the genome was masked for inference. It seems safer to use models trained on unmasked genomes. #genomeannotation #geneprediction github.com/Gaius-August...
Interested in #GenomeAssembly & #GenomeAnnotation?
Join our March course to learn how to create high-quality, haplotype-phased genomes using Illumina, @pacbio.bsky.social @nanoporetech.com & more.
www.physalia-courses.org/courses-work...
#Genomics #Bioinformatics @vertebrategenomes.bsky.social
#TEsky #TEworldwide #Transposons #Bioinformatics #Bioconda #GenomeAnnotation #TransposableElements #Genomics #ComparativeGenomics
💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
Genome annotations matter: characterizing Ensembl hg38 annotations from 2014 to 2023. #mRNA #GenomeAnnotation #EnsemblGenes #Isoforms #BMCgenomics
link.springer.com/article/10.1...
Join us Nov 18–20 for a Virtual Genome Annotation Workshop! Learn Linux, genome assembly, evidence-based annotation, & evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $500 ($400 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
➡️ buff.ly/sonWCgT
My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
galaxyproject.org/news/2025-07-22-ming-li-...
#UseGalaxy #GalaxyProject #EOSC #Bioinformatics #Genomics #GenomeAssembly #GenomeAnnotation #TrainingProgram (1/2)
De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome. #WheatGenome #Hexaploid #GenomeAnnotation #Transcriptomics #PanGenome @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
Annotation and functional prediction of RNA helicases in Ustilago maydis
#Ustilago
#Controlofpathogenicdevelopment
#genomeannotation
#RNAhelicases
#smutfungi
imafungus.pensoft.net/article/1517...
🔹 FAIR metadata for genome annotations: At #BioHackEU25, our #Annotation Committee teams up with the @researchdataall.bsky.social to build a unified framework for collecting, validating & harmonising FAIR metadata.
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
Later TODAY at 15:00 CEST! Efficient evidence-based genome annotation with EviAnn 🧬
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment. #GenomeAssembly #GenomeAnnotation #GenomeQuality #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
Great to see our PhD student Fabio Zanarello sharing his work yesterday at LongTREC summer school!
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
@crg.eu
Fabio Zanarello has a goal in his session: explain how #LongReads sequencing is integrated in the non-model genome annotation workflow.
#LongReadsTranscriptomics #LongTREC #GenomeAnnotation #Bioinformatics #EarthBioGenomeProject
🚀 We’ve just kicked off our Introduction to Genome Annotation course with Francesco Cicconardi & Tereza Manousaki!
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
Join us May 27–29 for a Virtual Genome Annotation Workshop! 🧬 Learn Linux, genome assembly, evidence-based annotation, and evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 Zoom + recording
💰 $500 ($400 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
The team used the REAT and Minos pipelines developed at the Earlham Institute. This approach has also been applied to annotate additional wheat wild relatives and as part of the @wheatinitiative.bsky.social. #GenomeAnnotation
@gemygk.bsky.social @swarbre.bsky.social
New release of Ensembl beta is out!!!
Many new annotations available, including new #cattle reference #genome, and 2 #t2t cattle genomes for Tuli and Wagyu breeds! 🐮🐮🐮
#genomeAnnotation #farmedAnimalsGenetics
Go and check it out!!!
beta.ensembl.org
Source: https://www.biorxiv.org/content/10.1101/2024.12.04.626846v1.full.pdf
OMAnnotator: a novel approach to building an annotated consensus genome sequence. #GenomeAnnotation #Genomics #Bioinformatics 🧬 🖥️ @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
Rfam 15.0 brings expanded genomes, improved RNA annotations, & new data types for advanced RNA research. Check out the latest updates! 🌟 #Bioinformatics #RNAresearch #GenomeAnnotation
📄 doi.org/10.1093/nar/...
EVBC👤: Sandra Triebel, Manja Marz
The Pfam protein families database: embracing AI/ML. #Pfam #ProteinDomains #GenomeAnnotation #AI #NAR #Bioinformatics 🧬 🖥️
academic.oup.com/nar/advance-...
The rice genome annotation project: an updated database for mining the rice genome. #RiceGenome #GenomeAnnotation #NAR 🧬 🖥️
academic.oup.com/nar/advance-...
Seems like it's time for a new #introduction! I've just started a postdoc with Colin Olito and Bengt Hansson at #LundUniversity. I'll be working with #SexChromosome #evolution in Wikstroemia, doing #genomics, #GenomeAnnotation, and other #bioinformatics things related to that. I'm an avid […]
