#nextflow

WorkAdventure Organize your online event in WorkAdventure to recreate spontaneous social interactions. Connect, collaborate and have fun with your teammates and attendees.

1 week ago

Puedo hacer un pipeline con #nextflow con los ojos cerrados, y eso que hace poco me tocó adaptarme en un par de días a unos cambios que han hecho, pero pideme 5 años innecesariamente, crack.

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Kevin Bonham

@kevinbonham.com

2 weeks ago

Really interesting integration of #julialang for the algorithms and #nextflow for the pipeline. In principal, the user doesn't need to know any julia to make use of this, but it lets the developers get all of the benefits of that language. Was a fun one too review, and happy to see it accepted!

🧪

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Stephen Turner

@stephenturner.us

2 weeks ago

nf-core/cutandrun: A #Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets joss.theoj.org/papers/10.21... 🧬💻🧪 github.com/nf-core/cuta...

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nf-core

@nf-co.re

2 weeks ago

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?

Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.

Please join our nf-core core/infrastructure member Matthias Hörtenhuber, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

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Incsteps

@incsteps.bsky.social

2 weeks ago

Release 0.4.0-edge3 · nextflow-io/nf-nomad Changelog What's Changed Update test setup with terraform driven local nomad+minio setup by @abhi18av in #112 Fix: Fallback to Nomad TaskEvents for exit code if .command.exit is missing by @matth...

Long time without a new version of #ibm #nomad #nextflow executor

nf-nomad release 0.4.0-edge3 has just been published

You can find the changelog at

github.com/nextflow-io/...

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Pipeline chaining, meta pipelines and automation (Part 2) | The Nextflow Podcast by Seqera Seqera | The Home for Open Science | From the developers of Nextflow, Wave, and MultiQC

3 weeks ago

🎙️Discover what’s changing in #Nextflow to make pipeline composition easier in our part 2 podcast episode on pipeline chaining, meta pipelines, and automation. 👀 Watch now: hubs.la/Q0473QrH0

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James Fellows Yates

@jfy133.genomic.social.ap.brid.gy

3 weeks ago

Small social media image with the following text: 17 May 2026 | Vilnius, Lithuania + online Virus Bioinformatics + nf-core Hybrid Collaborative Hackathon Calling all collaborative hackers! Propose a project (with QR code) Registration opens April 2026 Supported by the NFDI4Micorbiota, nf-core, and VirJenDB A satellite event of EBVC ViBioM 2026

X-post from Bluesky:

🧑‍💻Satellite Hackathon at #ViBioM2026!

Join the #Virus #Bioinformatics + @nf_core Hybrid Collaborative #Hackathon & collaborate on bioinformatic tools and ideas & contribute to reproducible workflows & research infrastructure.

Want to […]

[Original post on genomic.social]

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@gethemudo.ecoevo.social.ap.brid.gy

3 weeks ago

The #Nextflow Run training by @seqera.io is well underway in San Francisco, with participants learning how to run reproducible data analysis workflows at scale.📈

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Gonçalo

1 month ago

Original post on ecoevo.social

Announcing a #job offer in my lab (A2S-CIIMAR, Porto, Portugal) for a higher technician within my project, initMAPAfish that aims to create an open database of microbiome species present in fish species relevant for Portuguese aquaculture.

We are looking for someone with #bioinformatics […]

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Xavier Farré

@xavifar.bsky.social

1 month ago

PolyGenie

Tech stack: #Nextflow DSL2 | Python (statsmodels + joblib) | SQLite | Plotly Dash. Live GCAT demo 👉 polygenie.igtp.cat

Feedback welcome! #PheWAS #PRS #Bioinformatics #Genomics #openscience

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Riffomonas A project dedicated to improving the reproducibility of microbiome analyses

1 month ago

Van a hacer un ciclo de conferencias en mi máster, al que no puedo ir por otros motivos, y me hace gracia que le vayan a dedicar 2 horas a #Nextflow, un programa que llevaré usando como cuatro años y literalmente usé para uno de los trabajos que tenía que entregar.

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Max

@boehmax.org

2 months ago

My next obsession: workflow managers 🎈Yesterday night I binged videos from #riffomonas about #reproducible research. He used #snakemake , it looks nice! I also looked up #nextflow It looks fierce! So which one to learn?
Any advice? I'll use it for #bioinformatics #pipeline s; I mainly write in #R

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Phil Ewels

@ewels.bsky.social

2 months ago

We've been working really hard on a refresh of the super popular #Nextflow training materials.

@geraldinevda.bsky.social has rewritten much of #Hello #Nextflow and #Nextflow #Run and I'm in the process of recording new videos 📹📼🎞️

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Stephen Turner

@stephenturner.us

2 months ago

Reducing haystacks to needles - ViralClust: A #Nextflow pipeline to cluster viral sequences www.biorxiv.org/content/10.6... 🧬💻🧪 github.com/rnajena/vira...

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Phil Ewels: Bioinformatics at Scale: nf-core + Nextflow The Bioinformatics CRO Webinar Series February 18, 2026: Phil Ewels gives a talk about Nextflow and nf-core for scalable, reproducible bioinformatics.

2 months ago

Next month, @ewels.bsky.social (Product Manager for OSS at @seqera.io)will be joining the Bioinformatics CRO webinar series to discuss #Nextflow, @nf-co.re, and exciting new features for reproducible bioinformatics at scale. 👇

hubs.la/Q040__J00

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nf-core

@nf-co.re

2 months ago

WorkAdventure Organize your online event in WorkAdventure to recreate spontaneous social interactions. Connect, collaborate and have fun with your teammates and attendees.

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?

Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.

Please join our nf-core maintainer Evangelos Karatzas, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

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nf-core

@nf-co.re

2 months ago

WorkAdventure Organize your online event in WorkAdventure to recreate spontaneous social interactions. Connect, collaborate and have fun with your teammates and attendees.

🧑‍💻 Need help with #nfcore #nextflow #bioinformatics pipelines, running or developing?

Please join the 🌍🌎 Eur/M.E./Afr/Americas weekly helpdesk.

Please join our nf-core maintainer @rikehanssen.bsky.social, this Thursday at 14:30 CET | 08:30 ET on play.workadventu.re/@/nf-core/nf...

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Javier Santoyo

@jsantoyo.bsky.social

2 months ago

MobiCT: a UMI-based circulating tumor DNA analysis pipeline. #UMIs #cfDNA #Nextflow #Bioinformatics #Genomics #NARgenomicsAndBioinformatics 🧪🧬 🖥️
academic.oup.com/nargab/artic...

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Phil Ewels

@ewels.bsky.social

2 months ago

New #Nextflow #Podcast is out! 🎙️

It's been a while..! 😅 Had a lot of fun looking back at 2025, so much happened..

Stay tuned for more podcast episodes in 2026, hoping to get back to a more regular cadence again 🙂

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2 months ago

Está mal que yo lo diga, pero el pipeline de #Nextflow que estoy haciendo está quedando bonito. Eso sí, tengo al portátil viejo en plan FUUUUUUU de tanto ventilador.

Sorpresa: los datos que seleccioné para hacer una simulación de artículo y póster apenas me han dado resultados 🙃.

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How CytoReason Streamlined Nextflow with lakeFS for Smarter Data Pipelines Learn how CytoReason integrated lakeFS with Nextflow to version data products, eliminate intermediate storage, and deliver faster, reproducible disease models.

2 months ago

Check out the recent lakeFS blog post showcasing how
@cytoreason.bsky.social have utilized #Nextflow and #lakeFS to treat their disease models as versioned, reproducible data products.🦠 The result: a release cycle that's faster, cleaner, and more reproducible. hubs.la/Q03_5ynF0

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