Latest posts tagged with #ReproducibleScience on Bluesky
Here is an excellent and long awaited news for the world bio-imaging community: a new version of the FBbi ontology for light microscopy modalities was published! Available here purl.obolibrary.org/obo/fbbi.owl
forum.image.sc/t/a-new-vers...
#microscopy #reproduciblescience #AIreadyData
Interested in contributing to open-source tools but don’t know where to start?
Join Open Science Tools for a hands-on session: “My First Pull Request”
🗓 9 March | 13:00–14:00 CET
🔗 shorturl.at/a6M2z
Part of the @psychopy.org × WiCS+E workshop series
#OpenScience #GitHub #ReproducibleScience
Ran the same sweep multiple times on IBM Quantum (ibm_fez) and got consistent results in the corridor region. Treating it as a reproducible engineering effect first; I’ll post the exact circuit + parameters for independent checks. #QuantumComputing #IBMQuantum #Qiskit #ReproducibleScience
💡LinkedEarth has tutorial videos available on YouTube. The FROGS playlist contains information about #FAIR and #reproduciblescience. Check it out!
www.youtube.com/playlist?lis...
Geometric Quantum Tunneling in the MMA–DMF Framework
zenodo.org/records/18012515
#MMA_DMF #GeometricQuantumTunneling #QuantumTunneling #StochasticDynamics #GeneralizedLangevin #FluctuationDissipation #ReproducibleScience #ComputationalPhysics
Thanks @benbondlamberty.bsky.social for sharing kbroman's guide to getting started with reproducible research. A helpful resource for both ECRs interested in reproducibility and well-seasoned researchers looking to refine their practices
kbroman.org/steps2rr/
#OA #ReproducibleScience
I love papers that are well written and link to the open datasets they use, so I can follow the methods and reproduce the figures. #reproduciblescience
“Automated testing is a safety net that protects the program from its programmers.” 🐛 Yegor Bugayenko
The next time a scientist tells me they don’t have time to write tests, I’ll just point them to this quote.
#OpenScience #ReproducibleScience #DevTipsForScientists
The icing on the cake is when you then include foreign code that doesn’t have a license either. Well done! You’re violating code rights.
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Never ever do this!
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Next time, visit @coderefinery.org to avoid such mishaps.
#ScientistsWhoCode #OpenScience #ReproducibleScience
🔗 Snakemake for Bioinformatics – Playlist
👉 youtube.com/playlist?lis...
Been putting together a simple series on bioinformatics workflows using Bash & Snakemake. Fairly beginner-friendly.
Try it out.
#Snakemake #Bioinformatics #BashScripting #ReproducibleScience #BioinformaticsForBeginners
Making CO₂ useful starts with better science. This article by GETCO2 researchers calls for clear data, shared methods, and real-world testing to boost trust and progress in CO₂ conversion tech. Open data + smart tools = faster climate solutions. #CO2RR #CleanTech #ReproducibleScience
Screenshot of Visual Studio Code with multiple panels open. Each panel shows several R scripts, and two separate R sessions are running, titled "run pipe" and "run test". A rendered Markdown TODO list is visible in one panel.
Many folks ask why I prefer @vscode.dev over #RStudio by @posit.co🤔?
This is why 👇
🪟 Multiple panels for different scripts
🧠 Parallel R sessions for multitasking
🔧 But honestly? It's the superior #git integration for me! 😎
#Rstats #ReproducibleScience
Sharing this from @eLwazi:
Join Steven Lewis (Cold Spring Harbor Lab) for a seminar on using public DNA/RNA-seq data in cancer research and beyond.
🗓️ Wed, May 21 | 🕒 15:00 CAT |📍 Online
🔗 Register: zoom.us/meeting/regi...
#Genomics #CancerResearch #ReproducibleScience #eLwazi
🚨 Last places available!
📅 May 27th to 30th, 2025 (ONLINE)
🔗 www.transmittingscience.com/courses/statistics-and-b...
#TScourses #KeepLearning #RStats #FunctionalProgramming #DataScience #Bioinformatics #Tidyverse #ReproducibleScience
Image prevalidation helps make science reproducible. At MDC, our Engineering and Support Unit is leading the way. Read how they support open science with tools and training – plus an interview with Ella Bahry 👉 https://bit.ly/why-image-data-integrity-matters […]
[Original post on helmholtz.social]
💻 Our modular, open-science implementation is available on github.com/dagmarfraser/velocity-curvature-power-law-protocol Use it to escape confirmatory biases in your own velocity-curvature power law analyses! #OpenScience #ReproducibleScience #MATLABAmbassador
Had a great time delivering our Happy Git and GitHub 1-day course to researchers from @mncn-csic.bsky.social ! 🎉 We hope they’ll make the most of these tools to enhance reproducibility in their research. 🚀 #Git #GitHub #ReproducibleScience
So happy that I was able to play a small part in this really impressive study led by @elliotgould.bsky.social et al. on how the statistical analyses #ecologists choose affect the conclusions they come to.
bmcbiol.biomedcentral.com/articles/10....
#ReproducibleScience #Reproducibility #ecology #stats
Don't miss out! Join this workshop on #reproduciblescience on March 25!
Deborah from our Engineering & Support Unit @MDC_Berlin will host a workshop on #image #prevalidation, where she will introduce the importance of ensuring that image data is suitable for the analysis it is intended for […]
I just started using uv to manage packages and holy cow it’s so fast
#python #reproduciblescience
💡 Embracing variation offers several benefits:
It improves transparency, enhances generalizability, reduces the risk of p-hacking, and allows for quantification of result stability.
This leads to more robust scientific findings 🦾. #ReproducibleScience
4/8
Learn about a neuroimaging research center’s transition to open and reproducible science@ReproNim @keith_a_bush #OpenScience #ReproducibleScience
osf.io/fe74t/
I am totally biased but really enjoying @bgerstner90 talk on her Frugivoria database for the @EEBGradGroup Symposium!
Love #ReproducibleScience
Trying to learn a bit more about #reproduciblescience #reproducibility with this @edXOnline course
Principles, Statistical and Computational Tools for Reproducible Data Science
edx.org/course/princip…
Brilliant overview of Registered Reports by Prof @chrisdc77 from @cardiffuni at #ReproducibleSciExe workshop @UniofExeter. #openscience #ReproducibleScience
A final note on this thread: more quality measures (e.g. data / analysis sharing) = robust findings = move science more efficiently. #ReproducibleSciExe #openscience #ReproducibleScience
I feel much more confident after Prof @MarcusMunafo's talk & Q&A. Completely agree w/ "Not all of our research should be high risk / high return science". Looking forward to seeing a progressive cultural change within the scientific community! #openscience #ReproducibleScience
