Latest posts tagged with #SpatialTranscriptomics on Bluesky
📣 Registration has just opened for our one day troubleshooting workshop sharing our experiences and insights to the different stages of histological sample preparation to optimise for #spatialtranscriptomics experiments. #histology
🗓️ 17 June 2026
📍 Norwich, UK
👇 Register by 08 May
SPACO, our tool for Spatial Component Analysis for Spatial Sequencing Data, is now available as R package on CRAN!🎉 Congratulations to the team!!! We also have a Docker image which is available on Zenodo. #SpatialTranscriptomics #DimensionalityReduction
SR2P: an efficient stacking method to predict #protein abundance from #gene expression in #spatialtranscriptomics data
doi.org/10.64898/202...
Happy to collaborate with my colleague @abhikdutta.bsky.social on this fantastic work:
linkedin.com/posts/johana...
#Vitiligo #SpatialTranscriptomics #Dermatology #Collaboration #Immunology #TranslationalResearch
Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
▶️𝐑𝐞𝐪𝐮𝐞𝐬𝐭 𝐭𝐡𝐞 𝐫𝐞𝐩𝐨𝐫𝐭 𝐭𝐨𝐝𝐚𝐲 𝐚𝐭:
www.fiosgenomics.com/spatial-transcriptomic-a...
Webinar at EMBL-EBI: "Spatial transcriptomics in action: a case study from human reproductive development". 8 April 2026, 14.30-15.30 BST. Speaker (with headshot): Valentina Lorenzi, Wellcome Sanger Institute"
Join us next week for the last #webinar in our
#SpatialTranscriptomics series: Valentina Lorenzi will deliver the talk “Spatial transcriptomics in action: a case study from human reproductive development”.
Registration is free but essential: www.ebi.ac.uk/training/eve...
Map gene expression in situ with Novogene Spatial Transcriptomics. 10x Genomics' Visium HD tech preserve tissue architecture and uncover spatial patterns of regulation, cell interactions & microenvironments. #SpatialTranscriptomics #SpatialOmics https://tinyurl.com/mpdppu3j
Single-cell and #SpatialTranscriptomics of primary testicular #DLBCL reveal an exhausted CD8⁺ T cell–dominated microenvironment and spatial immune architecture, with E2F and CREB inhibition suppressing #lymphoma proliferation and #tumor growth.
#OpenAccess: doi.org/10.1016/j.ge...
Single cell sequencing. #NGS-based #spatialtranscriptomics. High-plex in situ.
These technologies were once impossible. Then they were improbable. Now they’re indispensable. So what will be next on that list?
See what’s next: https://bit.ly/4awhVJg
Graphics image about a webinar on managing spatial data, which will run on first April 2026 at 14:30 UK time. Image credit: Karen Arnott, EMBL-EBI
Join us next week for the sixth #webinar in our
#SpatialTranscriptomics series: Thomas C Smits and Morgan L. Turner will present the talk about managing spatial data.
Registration is free but essential: www.ebi.ac.uk/training/eve...
#SpatialTranscriptomics #CellSegmentation
FastReseg
github.com/Nanostring-B...
Using transcript scoring +"spatial doublet" test to rectify segmentation errors🥸
vs transcript-dominant approaches: Baysor Proseg
#SciReports 2025
www.nature.com/articles/s41...
Exciting new study from #EricAndWendySchmidtCenter fellow Josephine Yates, et al.,
introducing SpatialFusion: a lightweight #multimodal #FoundationModel combining #histopathology and #SpatialTranscriptomics for pathway-informed spatial #niche mapping.
👉 httpis://doi.org/10.64898/2026.03.16.712056
Today, the #DukeMGC is celebrating our 500th @10xgenomics.bsky.social #Xenium sample! From our first run in March of 2023 to now, we've learned a lot and generated data for many publications 🧬
For more info on our #SpatialOmics services, see dmpi.duke.edu/cores/molecu...
#SpatialTranscriptomics
Whole-embryo #spatialtranscriptomics at subcellular resolution from #gastrulation to #organogenesis | Science www.science.org/doi/10.1126/...
🧬 Win £2,000 for your sequencing project!
The Novogene UK & Ireland Sequencing Project Award 2026 supports researchers using single-cell RNA-seq, spatial transcriptomics, or multi-omics.
📅 Deadline: 4 May 2026
Apply now: tinyurl.com/4vv2wjre
#SingleCell #SpatialTranscriptomics #Genomics
We’ve had an amazing week learning about #SpatialTranscriptomics with Tancredi Pentimalli and this fantastic group of participants!
It was a very dynamic & interactive learning environment, & we hope everyone is leaving the course with plenty of new knowledge & ideas to apply in their research. 🚀📊
Dr. Sanja Vickovic in front of imaging technology.
Envision the future of #SpatialTranscriptomics and #DigitalPathology tools in a new article spotlighting IICD Core Member Sanja Vicković and her lab> bit.ly/40o5jOA #CancerResearch #BiomedicalEngineering #Multiomics #ColorectalCancer
SpatioTemporal Omics eneRgIES
STORIES
Learning Waddington differentiation potential (FGW loss) from #SpatialTranscriptomics (across time points) using Optimal Transport
Tunable weights of spatial information
Compute both pseudotime & velocity
#NatMethods 2025
www.nature.com/articles/s41...
We’ve kicked off our 5-day journey on #SpatialTranscriptomics with Tancredi Pentimalli and an amazing international group of attendees!
Excited for an inspiring week of learning and hands-on sessions ahead!
@bioconductor.bsky.social
#SingleCell #Genomics #Bioinformatics #RStats #SpatialOmics
Webinar at EMBL-EBI: Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions. 18 March 2026. 14:30-15:30 GMT. Speaker (with headshot): Koen Rademaker, Wellcome Sanger Institute
Join us next week for the fifth #webinar in our
#SpatialTranscriptomics series: Koen Rademaker will present the talk "Integrating single-cell and spatial transcriptomics to map the rules of neurological conditions".
Registration is free but essential: www.ebi.ac.uk/training/eve...
🖥️🧬
The framework reveals hidden tissue heterogeneity and is a powerful approach to high-resolution analysis in tumor and brain research.
#PKUResearch #PekingUniversity #AcademicSky #SpatialTranscriptomics #Genomics #Bioinformatics #ComputationalBiology @natcellbio.nature.com
#SpatialTranscriptomics
Optimizing Xenium In Situ data utility by quality assessment & best-practice analysis workflows
Must-read for Xenium user🔥
👉Segmentation
👉Spatially variable feature selection
👉Imputation
👉Spatial domain identification
#NatMethods 2025
www.nature.com/articles/s41...
Spatial transcriptomics is transforming tissue biology 🔬
Free webinar: 📅 March 31, 2026 | 10:00 AM BST
Learn fundamentals of 10x Genomics Visium HD, applications, sample prep best practices & data analysis.
Register here: tinyurl.com/zu8n4zr3
#SpatialTranscriptomics #Genomics #NGS #10xGenomics
Does your study require #spatialtranscriptomics?
We have a sample report available demonstrating how #bioinformatics can help!
Request the report today at:
www.fiosgenomics.com/spatial-transcriptomic-a...
Webinar at EMBL-EBI. Interactive visualisation of spatial transcriptomic data. 11 March 2026, 14:30-15:30 GMT. Speaker (with headshot): Michele Bortolomeazzi, DKFZ
Join us next week for the fourth #webinar in our
#SpatialTranscriptomics series, where we will talk about how to visualise spatial transcriptomics data using napari and Vitessce.
Registration is free but essential: www.ebi.ac.uk/training/eve...
🖥️🧬
🚨3-year Postdoc Position @halloulab.bsky.social (Kennedy Institute, Oxford) - on Spatial Biology & Bioinformatics of Fibrosis🚨
An exciting project combining #SpatialTranscriptomics & #Mechanobiology👇:
shorturl.at/LLS5r
Deadline: 16 March - Please RT 📢!
@kiroxford.bsky.social @ox.ac.uk
Postdoc researcher Sonia Fonseca in the single-cell labs at EI demonstrating our Vizgen MERSCOPE spatial platform
#Spatialtranscriptomics is a powerful tool to analyse gene expression at a cellular level, with increasing studies in multiple systems.
But traditional histology techniques can focus on the morphology of a sample, often without consideration of maintaining high-quality RNA for secondary analysis.
And earlier this year, scientists from Earlham Institute and @johninnescentre.bsky.social published a study using #spatialtranscriptomics to map the expression of 200 genes across four stages of wheat development, revealing new insights as to how the wheat spike forms.
#spatial #genomics
📄 Key paper on single cell RNA sequencing and spatial transcriptomics in fetal intestine:
www.sciencedirect.com/science/arti...
#WIMMSpotlight #WIMMCommunity #PaediatricResearch #IntestinalImmunology #SpatialTranscriptomics #SingleCellGenomics #RareDiseaseResearch #MRCWIMM
